PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_67250.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 319aa    MW: 35336.3 Da    PI: 6.4357
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_67250.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.68.3e-52161581128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...............kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                   +ppGfrFhPt+eelv +yL++kv+++k++l ++i+evd+y++ePwdL++               + +++++ewyfFs +d+ky+tg+r+nrat++g+
  MLOC_67250.1  16 VPPGFRFHPTEEELVGYYLARKVAAQKIDL-DIIQEVDLYRIEPWDLQErcgggrggrgarqapEDDQTSSEWYFFSFKDRKYPTGTRTNRATAAGF 111
                   69****************************.99**************955899999988775442222445************************** PP

           NAM  83 Wkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   Wkatg+dk+v+s+ ++ ++g++ktLvfy+grap+g+ktdW++heyrl
  MLOC_67250.1 112 WKATGRDKPVTSSrSRGVIGMRKTLVFYTGRAPNGRKTDWIIHEYRL 158
                   ***********9856678***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-568179IPR003441NAC domain
PROSITE profilePS5100556.39816179IPR003441NAC domain
PfamPF023655.4E-2717158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MLAMEQQHHE QEESCVPPGF RFHPTEEELV GYYLARKVAA QKIDLDIIQE VDLYRIEPWD  60
LQERCGGGRG GRGARQAPED DQTSSEWYFF SFKDRKYPTG TRTNRATAAG FWKATGRDKP  120
VTSSRSRGVI GMRKTLVFYT GRAPNGRKTD WIIHEYRLQT NEHAPTQEEG WVVCRAFQKP  180
TPNQRPSYIF PAYAAAPGLG GYYDTRPWLL HGQAGDHHFL QSASGATGAG GLGFPGQGIQ  240
YSDDVLESKH SLLGSIPQLI ESPPTISTTV AGCGDAGYDI IQQGEAAAGI DWNFLDSLLS  300
TSQLHQYSAT AASHLQLQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-5121791168Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3730020.0AK373002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3017O09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131327.11e-115secondary wall NAC transcription factor 4
RefseqXP_008667100.11e-115PREDICTED: secondary wall NAC transcription factor 4 isoform X1
SwissprotQ9C8W93e-89NAC30_ARATH; NAC domain-containing protein 30
TrEMBLM0YAC70.0M0YAC7_HORVD; Uncharacterized protein
STRINGMLOC_67250.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25943791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.19e-74vascular related NAC-domain protein 7